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Unraveling HRSA Compliance Requirements

Written by Synergy Billing | Mar 10, 2025 9:51:49 PM

 

Federally Qualified Health Centers (FQHCs), are health centers that give care to people who may not have access to healthcare otherwise. The Health Resources and Services Administration (HRSA) is a federal agency within the U.S. Department of Health and Human Services (HHS) that administers grant funding and compliance for FQHCs. HRSA’s mission is to improve access to healthcare for people who are underserved, including those who live in rural areas or don’t have insurance.   

HRSA provides funding, guidance, and oversight for Federally Qualified Health Centers (FQHCs), ensuring that they meet specific standards and operate according to government guidelines. This relationship is crucial because HRSA funding allows FQHCs to offer healthcare services to those who might not otherwise be able to afford them. 

Why is HRSA Important to FQHCs? 

HRSA is essential to FQHCs because it provides both funding and guidelines. This funding supports healthcare services, including primary care, dental care, mental health, and substance use services, as well as preventive care. To receive this funding, FQHCs must follow HRSA’s regulations and standards, which include providing affordable care, maintaining high-quality services, and documenting the care they provide. 

By following HRSA’s standards, FQHCs can keep receiving funds and support, which helps them offer sliding-scale fees (discounted fees based on a patient’s ability to pay) and cover the cost of providing care to patients who may not have insurance. 

 

What Are FQHCs Expected to Comply with Regarding HRSA? 

To stay compliant with HRSA, FQHCs must meet specific requirements in several areas: 

  1. Eligibility and Service Requirements: FQHCs must serve areas or populations that meet HRSA's criteria for "medically underserved," such as regions with limited access to healthcare services. They must offer a full range of primary and preventive care services and ensure that care is affordable. 

  2. Sliding Fee Scale: FQHCs are required to offer a sliding fee discount program based on a patient’s income and family size. They must develop policies on who qualifies for discounts and ensure that no one is denied care because of their inability to pay. 

  3. Quality and Accessibility Standards: HRSA sets quality standards that FQHCs must follow to provide safe, effective care. FQHCs are required to demonstrate that they are delivering quality care, which may involve patient satisfaction surveys, quality improvement programs, and tracking patient outcomes. 

  4. Financial Management and Accountability: FQHCs must manage HRSA funds responsibly. They need to keep accurate records of all spending, follow budget guidelines, and report financial data to HRSA. This ensures that HRSA funds are used for their intended purpose. 

  5. Governance Requirements: FQHCs must be governed by a board of directors, with a majority of members being patients of the health center. This patient-majority board ensures the center stays accountable to the community it serves. 

  6. Billing and Documentation: HRSA requires FQHCs to accurately document and bill for services. FQHCs must use standard billing codes and submit claims that reflect the actual services provided. They also need to keep complete records for each patient visit. 


  

Penalties for Non-Compliance with HRSA Requirements 

Non-compliance with HRSA requirements can lead to serious penalties, including: 

Loss of Funding: One of the most significant consequences is the loss of HRSA grant funding. If an FQHC fails to meet HRSA standards or misuses funds, it risks having its funding reduced or completely withdrawn. Since many FQHCs rely heavily on HRSA funding to operate, this can severely impact their ability to provide care. 

Audits and Investigations: HRSA may conduct audits or request additional documentation to investigate non-compliance. This can lead to increased oversight and stricter requirements if an FQHC is found to be violating HRSA standards. 

Corrective Action Plans (CAPs): If an FQHC has minor issues with compliance, HRSA may require them to submit a corrective action plan. This plan outlines how the center will address and fix the problems. Failure to follow through with this plan could lead to additional penalties. 

Fines and Penalties: In cases of severe or intentional non-compliance, FQHCs may face financial penalties. This could include fines for improper billing, mismanagement of funds, or failing to provide required services. 

Termination of FQHC Status: In extreme cases, HRSA can revoke an FQHC’s designation, which means it would lose all HRSA benefits, including funding and special billing privileges with Medicare and Medicaid. This would make it difficult for the center to continue operating. 

 

What Are Chapter 16 Billing Requirements? 

HRSA Chapter 16 billing requirements focus on the specific rules and guidelines that Federally Qualified Health Centers (FQHCs) must follow to get paid for the health services they provide. 

These requirements are rules from the Health Resources and Services Administration (HRSA) that FQHCs need to follow when they bill for services. The rules help ensure that FQHCs bill correctly, meaning they don’t overcharge or undercharge, and that they can prove they provided the service they billed for. 

 

Key Parts of Chapter 16 Requirements 

Here are the main things FQHCs need to follow to meet Chapter 16 billing requirements: 

  1. Correct Coding and Documentation: FQHCs need to use specific codes when they bill for services. These codes help explain what service was provided (like a check-up, vaccination, or dental cleaning). They also need to document everything they do for a patient, which means writing down details about each visit to show what happened. 

  2. Medicare and Medicaid Rules: Since FQHCs often treat patients covered by Medicare and Medicaid, they need to follow the special rules these programs have. For example, they have to know which services Medicare and Medicaid will pay for and how much they’ll pay. 

  3. Sliding Fee Discounts: FQHCs often have something called a "sliding fee scale," meaning they charge people different amounts based on how much money they make. FQHCs need to show that they offer this discount to people who qualify and that they keep records of it. 

  4. Financial and Compliance Audits: To prove that they’re following the rules, FQHCs must keep records of all the money they earn from services, donations, and grants. HRSA may review these records to check if the FQHC is using funds correctly. This is called an “audit.” 

  5. Quality of Care Reporting: HRSA requires FQHCs to show they are giving quality care, so FQHCs might need to report on things like patient satisfaction or how well patients are improving. This helps ensure they’re meeting HRSA’s standards for good care. 


 

How Can an FQHC Comply with Chapter 16? 

To follow these rules, an FQHC would need to: 

  1. Train Staff Properly: Everyone involved in billing, from doctors to billing clerks, needs to know how to code services accurately and understand Medicare and Medicaid requirements. 

  2. Keep Detailed Records: The FQHC needs a system for tracking patient visits, fees, and services. This way, they can easily show HRSA or Medicare/Medicaid that they billed correctly. 

  3. Offer a Sliding Fee Discount: They need to have a clear process for offering discounts to lower-income patients, and they need to record who gets these discounts. 

  4. Submit Claims Correctly: FQHCs must submit claims (requests for payment) in the correct format. They use electronic forms, like the 837 form, which is a standard form for billing. This form has specific fields for all the information insurance companies need to process the payment. 

  5. Regularly Review Billing Practices: To avoid mistakes, an FQHC should regularly check its billing to make sure it's accurate and follows all rules. 

  6. Report Quality Measures: FQHCs can track how well patients are doing and how satisfied they are, and report this to HRSA. This shows HRSA that they are providing effective care. 


  

Why Compliance Matters 

Compliance with HRSA’s standards is critical because it ensures that FQHCs can continue serving their communities, particularly low-income and underserved populations. By following HRSA requirements, FQHCs demonstrate accountability, manage funds responsibly, and uphold a high standard of care, which allows them to maintain federal support and achieve their mission of accessible, quality healthcare for all. 

HRSA plays a vital role in supporting and overseeing FQHCs. To receive and keep HRSA funding, FQHCs must meet specific standards related to patient care, governance, billing, and financial management. Non-compliance can lead to a range of penalties, from corrective action plans to a total loss of funding, which underscores the importance of adhering to HRSA guidelines. 

 

What Does an FQHC Need to Demonstrate? 

To stay compliant, an FQHC should be able to show that: 

They’re Billing Accurately: They must show their bills match the services provided, with the right codes and information. 

They’re Serving the Community Equitably: They should be able to show they’re helping people who need healthcare the most, including people with low income. 

They’re Giving Quality Care: They need to report on patient health outcomes and satisfaction to prove that they’re providing good care. 

They’re Using Funds Responsibly: They need records of their spending and billing to show that they’re managing money correctly. 

  

  1. Accurate Billing and Coding Practices

FQHCs need to ensure that all billing practices meet the strict guidelines laid out in Chapter 16. This includes:

  • Using Correct Procedure and Diagnosis Codes: For every service provided, FQHCs must use accurate CPT (Current Procedural Terminology) codes and ICD (International Classification of Diseases) diagnosis codes. This coding reflects the exact services rendered and is critical for correct billing. The coding team should be trained in FQHC-specific billing codes, as errors in coding can lead to denied claims and compliance issues. 
  • Ensuring Claims Reflect “Encounter-Based” Billing: FQHCs are typically reimbursed per “encounter,” not per individual service within that encounter. This means that all services provided to a patient during a single visit are billed together, rather than separately. Understanding this model and applying it consistently is crucial for compliance. 
  • Training Staff on Billing Rules for Medicare and Medicaid: Since FQHCs serve many patients with Medicare or Medicaid coverage, billing staff should be well-trained on both programs' requirements. This includes knowing what services are covered and any limitations specific to FQHCs. 
  1. Sliding Fee Discount Program

Chapter 16 requires that FQHCs offer a sliding fee discount program based on patients' income and family size, ensuring care remains affordable. To comply: 

  • Establish and Maintain a Sliding Fee Scale: FQHCs must create a clear sliding fee discount scale that outlines how discounts apply based on income levels. This should be reviewed periodically to ensure it aligns with federal poverty guidelines. 
  • Apply Sliding Fee Policies Consistently: FQHCs must ensure that all patients who qualify for discounts receive them without discrimination. Policies should be transparent, and staff should be trained to handle patients' inquiries regarding the sliding fee discount program. 
  • Document Discount Eligibility: To maintain compliance, FQHCs must keep records of each patient’s eligibility for sliding fee discounts. This includes documentation of the patient’s income, family size, and the specific discount applied. 
  1. Documentation and Record-Keeping

Accurate documentation is essential to justify the services billed and meet HRSA’s auditing requirements. 

  • Maintain Complete Patient Records: For each encounter, FQHCs should document all services provided, including notes from the healthcare provider. Documentation should reflect the reason for the visit, procedures performed, diagnoses, and any follow-up care recommended. 
  • Ensure Compliance with ANSI X12 Transaction Standards: FQHCs use the ANSI X12 837 transaction for claims submissions and the 835 for remittance advice. These electronic standards require specific data elements to ensure claims are processed correctly. FQHCs should verify that all required fields are complete and accurate in each submission to prevent claim rejections. 
  • Retain Records as Required by HRSA: HRSA may audit FQHCs, so it’s essential to keep billing and patient records for the period specified by HRSA, typically at least six years. This includes claims, payments, adjustments, and any documentation supporting eligibility for sliding fees. 
  1. Quality Reporting and Performance Measurement

FQHCs must demonstrate that they provide high-quality care. Chapter 16 outlines quality measures that FQHCs are expected to track and report. 

  • Implement Quality Improvement (QI) Programs: HRSA requires FQHCs to establish QI programs to regularly review care quality and make improvements. FQHCs should track metrics such as patient outcomes, adherence to treatment plans, and preventive care rates. Regular reporting on these metrics demonstrates compliance with HRSA’s quality care standards. 
  • Patient Satisfaction Surveys: Conducting regular patient satisfaction surveys helps FQHCs assess the effectiveness of their services. These surveys should be analyzed, and improvements should be made based on feedback. Reporting these results to HRSA demonstrates that the FQHC is responsive to patient needs. 
  • Track Key Health Indicators: FQHCs must monitor specific health indicators, such as vaccination rates, chronic disease management, and preventive screenings. HRSA reviews these indicators as part of compliance assessments, and they are often tied to performance-based funding. 
  1. Financial Management and Audit Preparedness

Chapter 16 emphasizes the need for FQHCs to manage funds responsibly and demonstrate financial transparency. 

  • Use Separate Accounts for HRSA Funds: FQHCs should track HRSA funds separately from other revenue sources to show how funds are being spent. This includes salaries, medical supplies, facilities, and other operational expenses funded by HRSA. 
  • Regular Financial Reporting: FQHCs must submit financial reports to HRSA detailing how funds are used. These reports should be timely and accurate to avoid compliance issues. 
  • Prepare for HRSA Audits: HRSA may audit FQHCs to verify they are using funds appropriately. Preparing for audits means maintaining organized financial records, being able to show the spending breakdown of HRSA grants, and following an established protocol for responding to audit findings.   
  1. Governance and Community Involvement

  

FQHCs are expected to be accountable to the communities they serve, with governance practices that ensure patient voices are heard. 

  • Patient-Majority Board of Directors: HRSA requires FQHCs to be governed by a board with a majority of members who are patients. This board helps ensure the health center remains focused on the needs of the community. 
  • Regular Board Training and Oversight: FQHCs should provide training for board members on compliance requirements, HRSA standards, and the health center’s mission. This enables the board to make informed decisions and oversee compliance effectively. 
  • Conduct Community Needs Assessments: FQHCs should regularly assess the health needs of their communities, then adjust services as needed. This helps demonstrate to HRSA that the center is responsive to community needs. 

  

Penalties for Non-Compliance 

Non-compliance with Chapter 16 requirements can lead to several penalties:

  1. Corrective Action Plans (CAPs): HRSA may require FQHCs to implement CAPs if minor compliance issues are identified. This plan outlines specific steps to address and resolve deficiencies. 

  2. Funding Reduction or Termination: If compliance issues are severe or persistent, HRSA may reduce funding or terminate an FQHC’s status. This can impact the center’s ability to provide services and jeopardize its ability to remain operational. 

  3. Increased Auditing and Oversight: FQHCs that fail to comply may face more frequent audits and additional oversight, which can strain resources and limit their flexibility in managing services. 

  4. Financial Penalties: For significant billing or documentation errors, FQHCs may face fines. This is often the case for billing fraud, misuse of funds, or failure to meet HRSA’s financial guidelines. 


  

In the complex landscape of FQHC operations, managing compliance with HRSA Chapter 16 billing requirements can be overwhelming. This is where Synergy Billing steps in as the nation's only U.S.-based FQHC billing expert, dedicated exclusively to the unique needs of FQHCs. We specialize in maximizing patient service revenue while ensuring adherence to the stringent billing and compliance standards that keep health centers running smoothly. With our deep expertise in FQHC billing and commitment to compliance, Synergy Billing empowers health centers to focus on what matters most: providing quality, accessible care to underserved communities. Let us partner with you to navigate these requirements effectively, protect your funding, and optimize revenue, so you can concentrate on delivering vital healthcare services to those who need it most. 

At Synergy Billing, we specialize in FQHC revenue cycle management—helping health centers navigate Medicare billing, optimize reimbursements, and stay financially strong in an evolving healthcare landscape. 

📞 Contact us today to ensure your FQHC is prepared for the changes ahead!